GO2MSIG GO based GSEA gene set generator
Project home page and user guide.
NCBI gene2go downloaded on 6/4/2012. GO database is the 19/3/2012 release.
Gene association parameters
Gene association data source:
Affymetrix annotation file
Agilent annotation file
GO project GAF file
For NCBI, GO db or GAF files, enter numeric taxon ID:
or use the
For Agilent, Affymetrix or GAF files select the file to upload:
For NCBI, GO db or GAF choose evidence codes to include or exclude:
Propagate gene associations up ontology hierarchy
For NCBI database or GAF file use geneid or gene symbol:
Optional ID mapping file:
Repress ids not present in mapping file
By default the program uses a built-in GO database, however you can upload an OBO file instead if you wish to use a specific one. Note that this is likely to be slow.
Optional OBO file:
Create genesets for:
Maximum geneset size:
Minimum geneset size: