GO2MSIG GO based GSEA gene set generator
Project home page and user guide.
NCBI gene2go downloaded on 6/4/2012. GO database is the 19/3/2012 release.
Gene association parameters
Gene association data source:
NCBI gene2go
GO database
Affymetrix annotation file
Agilent annotation file
GO project GAF file
For NCBI, GO db or GAF files, enter numeric taxon ID:
or use the
For Agilent, Affymetrix or GAF files select the file to upload:
For NCBI, GO db or GAF choose evidence codes to include or exclude:
include
exclude
ALL
EXP
IC
IDA
IEA
IEP
IGC
IGI
IMP
IPI
ISA
ISM
ISO
ISS
NAS
ND
NR
RCA
TAS
Propagate gene associations up ontology hierarchy
ID mapping
For NCBI database or GAF file use geneid or gene symbol:
symbol
id
Optional ID mapping file:
Repress ids not present in mapping file
Ontology source
By default the program uses a built-in GO database, however you can upload an OBO file instead if you wish to use a specific one. Note that this is likely to be slow.
Optional OBO file:
Output parameters
Create genesets for:
Molecular function
Biological process
Cellular compartment
Maximum geneset size:
Minimum geneset size:
Output format:
gmt
gmx