GO2MSIG GO based GSEA gene set generator
home | web interface | prebuilt sets | usage and install | downloads    NCBI gene2go and GO database downloaded on 16 September 2013.

Gene association parameters

Gene association data source:

For NCBI, GO db or GAF files, enter numeric taxon ID: or use the

For Agilent, Affymetrix or GAF files select the file to upload:

For NCBI, GO db or GAF choose evidence codes to include or exclude:





ID mapping

For NCBI database or GAF file use geneid or gene symbol:

Optional ID mapping file:

Ontology source

By default the program uses a built-in GO database, however you can upload an OBO file instead if you wish to use a specific one. Note that this is likely to be slow.

Optional OBO file:

Output parameters

Create genesets for:

Maximum geneset size: Minimum geneset size:

Output format:


Website updated 8 November 2013.   For questions about this project please contact jacp10 at bioinformatics.org.