GO2MSIG GO based GSEA gene set generator
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Prebuilt GO derived MSigDB format gene sets for use with GSEA
These gene set collections are in the form of .gmt files which can be used directly with Gene Set Enrichment Analysis (GSEA) from the Broad Institute.
They have been derived from the gene2go annotation data at the NCBI. They are analagous to the GO-based 'c5' series of human-only gene set collections available from MSigDB, but have been calculated for all species in the gene2go table. The current human c5 collection from MSigDB is based on data from 2008, whereas these sets are based on data from April 2015.

Arabidopsis thaliana (Thale cress - taxon 3702)
Aspergillus nidulans FGSC A4 (taxon 227321)
Bacillus anthracis str. Ames (taxon 198094)
Bos taurus (Cow - taxon 9913)
Caenorhabditis elegans (taxon 6239)
Canis lupus familiaris (taxon 9615)
Coxiella burnetii RSA 493 (taxon 227377)
Cryptococcus neoformans var. neoformans JEC21 (taxon 214684)
Danio rerio (Zebra fish - taxon 7955)
Dictyostelium discoideum AX4 (taxon 352472)
Drosophila melanogaster (Fruit fly - taxon 7227)
Escherichia coli str. K-12 substr. MG1655 (taxon 511145)
Gallus gallus (Chicken - taxon 9031)
Geobacter sulfurreducens PCA (taxon 243231)
Homo sapiens (Human - taxon 9606)
Listeria monocytogenes serotype 4b str. F2365 (taxon 265669)
Mus musculus (Mouse - taxon 10090)
Oryza sativa Japonica Group (Japanese rice - taxon 39947)
Plasmodium falciparum 3D7 (taxon 36329)
Pseudomonas protegens Pf-5 (taxon 220664)
Pseudomonas syringae pv. tomato str. DC3000 (taxon 223283)
Rattus norvegicus (Rat - taxon 10116)
Saccharomyces cerevisiae S288c (taxon 559292)
Schizosaccharomyces pombe 972h- (taxon 284812)
Shewanella oneidensis MR-1 (taxon 211586)
Sus scrofa (taxon 9823)

Page updated 6 April 2015.   For questions about this project please contact jacp10 at bioinformatics.org.