GO2MSIG GO based GSEA gene set generator
home | web interface | prebuilt sets | usage and install | downloads    NCBI gene2go and GO database downloaded on 3 April 2015.
Arabidopsis thaliana (Thale cress - taxon 3702) GO derived MSigDB format gene sets for use with GSEA
These gene set collections are in the form of .gmt files which can be used directly with Gene Set Enrichment Analysis (GSEA) from the Broad Institute.
They have been derived from the gene2go annotation data at the NCBI. They are analagous to the GO-based 'c5' series of human-only gene set collections available from MSigDB. The number of sets in each collection is shown in brackets after the ontology name.

Arabidopsis thaliana (Thale cress - taxon 3702) genes identified by gene ID

High quality GO annotations only (EXP,IDA,IEP,IGI,IMP,IPI,ISS,TAS)
cellular compartment (214)
molecular function (472)
biological process (1426)
all ontologies (2102)

All GO annotations including IEA
cellular compartment (299)
molecular function (633)
biological process (1701)
all ontologies (2625)

Arabidopsis thaliana (Thale cress - taxon 3702) genes identified by gene symbol

High quality GO annotations only (EXP,IDA,IEP,IGI,IMP,IPI,ISS,TAS)
cellular compartment (214)
molecular function (471)
biological process (1426)
all ontologies (2101)

All GO annotations including IEA
cellular compartment (299)
molecular function (633)
biological process (1701)
all ontologies (2625)


Page updated 6 April 2015.   For questions about this project please contact jacp10 at bioinformatics.org.